{ "cells": [ { "cell_type": "code", "execution_count": 3, "id": "190a20db-2167-4f7f-87fb-bbaff80a38a2", "metadata": {}, "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ "Retrieving notices: done\n", "Channels:\n", " - conda-forge\n", " - bioconda\n", "Platform: linux-64\n", "Collecting package metadata (repodata.json): done\n", "Solving environment: done\n", "\n", "\n", "==> WARNING: A newer version of conda exists. <==\n", " current version: 25.7.0\n", " latest version: 26.1.0\n", "\n", "Please update conda by running\n", "\n", " $ conda update -n base -c conda-forge conda\n", "\n", "\n", "\n", "## Package Plan ##\n", "\n", " environment location: /opt/conda/envs/quarTeTdependencies\n", "\n", " added / updated specs:\n", " - blast=2.14.0\n", " - cd-hit=4.8.1\n", " - gnuplot=5.4\n", " - minimap2=2.26\n", " - mummer4=4.0.0rc1\n", " - python=3.11.4\n", " - r-ggplot2=3.4.4\n", " - r-rideogram=0.2.2\n", " - r=4.3\n", " - tidk=0.2.31\n", " - trf=4.09.1\n", " - unimap=0.1\n", "\n", "\n", "The following packages will be downloaded:\n", "\n", " package | build\n", " ---------------------------|-----------------\n", " _libgcc_mutex-0.1 | conda_forge 3 KB conda-forge\n", " _openmp_mutex-4.5 | 2_gnu 23 KB conda-forge\n", " _r-mutex-1.0.1 | anacondar_1 3 KB conda-forge\n", " alsa-lib-1.2.15.3 | hb03c661_0 571 KB conda-forge\n", " attr-2.5.2 | h39aace5_0 66 KB conda-forge\n", " binutils_impl_linux-64-2.45|bootstrap_h59bd682_5 3.5 MB conda-forge\n", " blast-2.14.0 | pl5321h6f7f691_2 145.7 MB bioconda\n", " c-ares-1.34.6 | hb03c661_0 203 KB conda-forge\n", " ca-certificates-2026.1.4 | hbd8a1cb_0 143 KB conda-forge\n", " cairo-1.18.0 | h3faef2a_0 959 KB conda-forge\n", " cd-hit-4.8.1 | h43eeafb_11 184 KB bioconda\n", " curl-8.8.0 | he654da7_1 163 KB conda-forge\n", " dbus-1.13.6 | h5008d03_3 604 KB conda-forge\n", " entrez-direct-24.0 | he881be0_0 16.3 MB bioconda\n", " expat-2.7.3 | hecca717_0 141 KB conda-forge\n", " fontconfig-2.14.2 | h14ed4e7_0 266 KB conda-forge\n", " fonts-conda-ecosystem-1 | 0 4 KB conda-forge\n", " fonts-conda-forge-1 | hc364b38_1 4 KB conda-forge\n", " freetype-2.12.1 | h267a509_2 620 KB conda-forge\n", " gcc_impl_linux-64-15.2.0 | hc5723f1_16 76.6 MB conda-forge\n", " gdk-pixbuf-2.42.12 | hb9ae30d_0 516 KB conda-forge\n", " gfortran_impl_linux-64-15.2.0| h281d09f_16 19.1 MB conda-forge\n", " giflib-5.2.2 | hd590300_0 75 KB conda-forge\n", " glib-2.80.2 | hf974151_0 586 KB conda-forge\n", " glib-tools-2.80.2 | hb6ce0ca_0 112 KB conda-forge\n", " gnuplot-5.4.10 | hb1719d7_0 1.1 MB conda-forge\n", " gst-plugins-base-1.24.4 | h9ad1361_0 2.7 MB conda-forge\n", " gstreamer-1.24.4 | haf2f30d_0 1.9 MB conda-forge\n", " gxx_impl_linux-64-15.2.0 | hda75c37_16 15.6 MB conda-forge\n", " harfbuzz-9.0.0 | hfac3d4d_0 1.5 MB conda-forge\n", " icu-73.2 | h59595ed_0 11.5 MB conda-forge\n", " k8-0.2.5 | hdcf5f25_4 1.7 MB bioconda\n", " kernel-headers_linux-64-6.12.0| he073ed8_5 1.5 MB conda-forge\n", " lame-3.100 | h166bdaf_1003 496 KB conda-forge\n", " ld_impl_linux-64-2.45 |bootstrap_ha15bf96_5 712 KB conda-forge\n", " libblas-3.11.0 |5_h4a7cf45_openblas 18 KB conda-forge\n", " libcap-2.77 | h3ff7636_0 119 KB conda-forge\n", " libclang-cpp15-15.0.7 |default_h127d8a8_5 16.4 MB conda-forge\n", " libclang13-18.1.7 |default_h087397f_0 10.5 MB conda-forge\n", " libcups-2.3.3 | h4637d8d_4 4.3 MB conda-forge\n", " libcurl-8.8.0 | hca28451_1 401 KB conda-forge\n", " libdeflate-1.20 | hd590300_0 70 KB conda-forge\n", " libevent-2.1.12 | hf998b51_1 417 KB conda-forge\n", " libffi-3.5.2 | h3435931_0 57 KB conda-forge\n", " libflac-1.5.0 | he200343_1 415 KB conda-forge\n", " libgcc-15.2.0 | he0feb66_16 1018 KB conda-forge\n", " libgcc-devel_linux-64-15.2.0| hcc6f6b0_116 3.0 MB conda-forge\n", " libgcc-ng-15.2.0 | h69a702a_16 27 KB conda-forge\n", " libgd-2.3.3 | h119a65a_9 219 KB conda-forge\n", " libgfortran-15.2.0 | h69a702a_16 27 KB conda-forge\n", " libgfortran-ng-15.2.0 | h69a702a_16 27 KB conda-forge\n", " libgfortran5-15.2.0 | h68bc16d_16 2.4 MB conda-forge\n", " libglib-2.80.2 | hf974151_0 3.7 MB conda-forge\n", " libgomp-15.2.0 | he0feb66_16 589 KB conda-forge\n", " libidn2-2.3.8 | hfac485b_1 136 KB conda-forge\n", " liblapack-3.11.0 |5_h47877c9_openblas 18 KB conda-forge\n", " libllvm15-15.0.7 | hb3ce162_4 31.8 MB conda-forge\n", " libllvm18-18.1.7 | hb77312f_0 36.6 MB conda-forge\n", " liblzma-5.8.2 | hb03c661_0 111 KB conda-forge\n", " liblzma-devel-5.8.2 | hb03c661_0 454 KB conda-forge\n", " libnghttp2-1.58.0 | h47da74e_1 617 KB conda-forge\n", " libogg-1.3.5 | hd0c01bc_1 213 KB conda-forge\n", " libopus-1.6.1 | h280c20c_0 317 KB conda-forge\n", " libpng-1.6.43 | h2797004_0 281 KB conda-forge\n", " libpq-16.11 | hc183893_2 2.4 MB conda-forge\n", " librsvg-2.58.1 | hadf69e7_0 6.0 MB conda-forge\n", " libsanitizer-15.2.0 | h90f66d4_16 7.3 MB conda-forge\n", " libsndfile-1.2.2 | hc7d488a_2 347 KB conda-forge\n", " libsqlite-3.46.0 | hde9e2c9_0 845 KB conda-forge\n", " libssh2-1.11.0 | h0841786_0 265 KB conda-forge\n", " libstdcxx-15.2.0 | h934c35e_16 5.6 MB conda-forge\n", " libstdcxx-devel_linux-64-15.2.0| hd446a21_116 19.8 MB conda-forge\n", " libstdcxx-ng-15.2.0 | hdf11a46_16 27 KB conda-forge\n", " libsystemd0-258.3 | h6569c3e_0 512 KB conda-forge\n", " libtiff-4.6.0 | h1dd3fc0_3 276 KB conda-forge\n", " libunistring-0.9.10 | h7f98852_0 1.4 MB conda-forge\n", " libuuid-2.41.3 | h5347b49_0 39 KB conda-forge\n", " libvorbis-1.3.7 | h54a6638_2 279 KB conda-forge\n", " libwebp-1.4.0 | h2c329e2_0 90 KB conda-forge\n", " libwebp-base-1.4.0 | hd590300_0 429 KB conda-forge\n", " libxcb-1.15 | h0b41bf4_0 375 KB conda-forge\n", " libxkbcommon-1.7.0 | h662e7e4_0 580 KB conda-forge\n", " libxml2-2.12.7 | hc051c1a_1 688 KB conda-forge\n", " libzlib-1.2.13 | h4ab18f5_6 60 KB conda-forge\n", " minimap2-2.26 | he4a0461_2 1.1 MB bioconda\n", " mpg123-1.32.9 | hc50e24c_0 480 KB conda-forge\n", " mummer4-4.0.0rc1 | pl5321hdbdd923_7 547 KB bioconda\n", " mysql-common-8.3.0 | hf1915f5_4 766 KB conda-forge\n", " mysql-libs-8.3.0 | hca2cd23_4 1.5 MB conda-forge\n", " ncbi-vdb-3.3.0 | h9948957_0 8.2 MB bioconda\n", " nspr-4.38 | h29cc59b_0 223 KB conda-forge\n", " nss-3.100 | hca3bf56_0 2.0 MB conda-forge\n", " openssl-3.6.1 | h35e630c_1 3.0 MB conda-forge\n", " packaging-26.0 | pyhcf101f3_0 70 KB conda-forge\n", " pango-1.54.0 | h4c5309f_1 437 KB conda-forge\n", " pcre-8.45 | h9c3ff4c_0 253 KB conda-forge\n", " pcre2-10.43 | hcad00b1_0 929 KB conda-forge\n", " perl-5.32.1 | 7_hd590300_perl5 12.7 MB conda-forge\n", " perl-archive-tar-3.04 | pl5321hdfd78af_0 34 KB bioconda\n", " perl-carp-1.50 | pl5321hd8ed1ab_0 22 KB conda-forge\n", " perl-common-sense-3.75 | pl5321hd8ed1ab_0 20 KB conda-forge\n", " perl-compress-raw-bzip2-2.214| pl5321hda65f42_0 54 KB conda-forge\n", " perl-compress-raw-zlib-2.214| pl5321h4dac143_0 79 KB conda-forge\n", " perl-encode-3.21 | pl5321hb9d3cd8_1 1.7 MB conda-forge\n", " perl-exporter-5.74 | pl5321hd8ed1ab_0 19 KB conda-forge\n", " perl-exporter-tiny-1.002002| pl5321hd8ed1ab_0 28 KB conda-forge\n", " perl-extutils-makemaker-7.70| pl5321hd8ed1ab_0 154 KB conda-forge\n", " perl-io-compress-2.216 | pl5321h503566f_0 85 KB bioconda\n", " perl-io-zlib-1.15 | pl5321hdfd78af_1 12 KB bioconda\n", " perl-json-4.10 | pl5321hdfd78af_1 56 KB bioconda\n", " perl-json-xs-4.04 | pl5321h9948957_0 69 KB bioconda\n", " perl-list-moreutils-0.430 | pl5321hdfd78af_0 32 KB bioconda\n", " perl-list-moreutils-xs-0.430| pl5321h7b50bb2_5 50 KB bioconda\n", " perl-parent-0.243 | pl5321hd8ed1ab_0 14 KB conda-forge\n", " perl-pathtools-3.75 | pl5321hb9d3cd8_2 49 KB conda-forge\n", " perl-scalar-list-utils-1.70| pl5321hb03c661_0 51 KB conda-forge\n", " perl-storable-3.15 | pl5321hb9d3cd8_2 70 KB conda-forge\n", " perl-types-serialiser-1.01 | pl5321hdfd78af_0 13 KB bioconda\n", " pip-26.0 | pyh8b19718_0 1.1 MB conda-forge\n", " pthread-stubs-0.4 | hb9d3cd8_1002 8 KB conda-forge\n", " pulseaudio-client-17.0 | hb77b528_0 740 KB conda-forge\n", " python-3.11.4 |hab00c5b_0_cpython 29.3 MB conda-forge\n", " qt-main-5.15.8 | hc9dc06e_21 58.5 MB conda-forge\n", " r-4.3 | r43hd8ed1ab_1008 18 KB conda-forge\n", " r-base-4.3.3 | hf0d99cb_1 24.5 MB conda-forge\n", " r-base64enc-0.1_3 | r43hb1dbf0f_1007 44 KB conda-forge\n", " r-boot-1.3_32 | r43hc72bb7e_0 614 KB conda-forge\n", " r-class-7.3_23 | r43h2b5f3a1_0 104 KB conda-forge\n", " r-cli-3.6.5 | r43h93ab643_0 1.2 MB conda-forge\n", " r-cluster-2.1.8.1 | r43hb67ce94_0 562 KB conda-forge\n", " r-codetools-0.2_20 | r43hc72bb7e_1 106 KB conda-forge\n", " r-colorspace-2.1_1 | r43hdb488b9_0 2.4 MB conda-forge\n", " r-crayon-1.5.3 | r43hc72bb7e_1 162 KB conda-forge\n", " r-dplyr-1.1.4 | r43h0d4f4ea_1 1.3 MB conda-forge\n", " r-ellipsis-0.3.2 | r43hb1dbf0f_3 42 KB conda-forge\n", " r-fansi-1.0.6 | r43hb1dbf0f_1 310 KB conda-forge\n", " r-farver-2.1.2 | r43ha18555a_1 1.4 MB conda-forge\n", " r-foreign-0.8_90 | r43h2b5f3a1_0 261 KB conda-forge\n", " r-generics-0.1.4 | r43hc72bb7e_0 84 KB conda-forge\n", " r-ggplot2-3.4.4 | r43hc72bb7e_0 3.9 MB conda-forge\n", " r-glue-1.8.0 | r43h2b5f3a1_0 159 KB conda-forge\n", " r-grimport2-0.3_3 | r43hc72bb7e_0 252 KB conda-forge\n", " r-gtable-0.3.6 | r43hc72bb7e_0 221 KB conda-forge\n", " r-isoband-0.2.7 | r43ha18555a_3 1.6 MB conda-forge\n", " r-jpeg-0.1_11 | r43hc5f1ce6_0 55 KB conda-forge\n", " r-kernsmooth-2.23_26 | r43h8461fee_0 98 KB conda-forge\n", " r-labeling-0.4.3 | r43hc72bb7e_1 67 KB conda-forge\n", " r-lattice-0.22_7 | r43h2b5f3a1_0 1.3 MB conda-forge\n", " r-lifecycle-1.0.4 | r43hc72bb7e_1 119 KB conda-forge\n", " r-magrittr-2.0.3 | r43hb1dbf0f_3 204 KB conda-forge\n", " r-mass-7.3_60.0.1 | r43hb1dbf0f_1 1.1 MB conda-forge\n", " r-matrix-1.6_5 | r43he966344_1 3.7 MB conda-forge\n", " r-mgcv-1.9_3 | r43h2ae2be5_0 3.3 MB conda-forge\n", " r-munsell-0.5.1 | r43hc72bb7e_1 241 KB conda-forge\n", " r-nlme-3.1_168 | r43hb67ce94_0 2.2 MB conda-forge\n", " r-nnet-7.3_20 | r43h2b5f3a1_0 128 KB conda-forge\n", " r-pillar-1.11.0 | r43hc72bb7e_0 612 KB conda-forge\n", " r-pkgconfig-2.0.3 | r43hc72bb7e_4 26 KB conda-forge\n", " r-png-0.1_8 | r43h21f035c_2 59 KB conda-forge\n", " r-purrr-1.1.0 | r43h54b55ab_0 526 KB conda-forge\n", " r-r6-2.6.1 | r43hc72bb7e_0 92 KB conda-forge\n", " r-rcolorbrewer-1.1_3 | r43h785f33e_3 67 KB conda-forge\n", " r-recommended-4.3 | r43hd8ed1ab_1007 18 KB conda-forge\n", " r-rideogram-0.2.2 | r43hc72bb7e_4 2.5 MB conda-forge\n", " r-rlang-1.1.6 | r43h93ab643_0 1.5 MB conda-forge\n", " r-rpart-4.1.24 | r43h2b5f3a1_0 684 KB conda-forge\n", " r-rsvg-2.6.0 | r43hc7fd59d_1 271 KB conda-forge\n", " r-scales-1.4.0 | r43hc72bb7e_0 743 KB conda-forge\n", " r-spatial-7.3_18 | r43h2b5f3a1_0 150 KB conda-forge\n", " r-stringi-1.8.4 | r43ha8ce623_2 878 KB conda-forge\n", " r-stringr-1.5.2 | r43h785f33e_0 291 KB conda-forge\n", " r-survival-3.8_3 | r43h2b5f3a1_0 7.9 MB conda-forge\n", " r-tibble-3.3.0 | r43h2b5f3a1_0 600 KB conda-forge\n", " r-tidyr-1.3.1 | r43h0d4f4ea_1 1.1 MB conda-forge\n", " r-tidyselect-1.2.1 | r43hc72bb7e_1 211 KB conda-forge\n", " r-utf8-1.2.6 | r43h2b5f3a1_0 142 KB conda-forge\n", " r-vctrs-0.6.5 | r43h0d4f4ea_1 1.2 MB conda-forge\n", " r-viridislite-0.4.2 | r43hc72bb7e_2 1.2 MB conda-forge\n", " r-withr-3.0.2 | r43hc72bb7e_0 226 KB conda-forge\n", " r-xml-3.99_0.17 | r43he716329_1 1.7 MB conda-forge\n", " readline-8.3 | h853b02a_0 337 KB conda-forge\n", " setuptools-80.10.2 | pyh332efcf_0 663 KB conda-forge\n", " sysroot_linux-64-2.39 | hc4b9eeb_5 39.6 MB conda-forge\n", " tidk-0.2.31 | hdbdd923_2 1.6 MB bioconda\n", " tk-8.6.13 |noxft_h4845f30_101 3.2 MB conda-forge\n", " trf-4.09.1 | h7b50bb2_7 68 KB bioconda\n", " tzdata-2025c | hc9c84f9_1 116 KB conda-forge\n", " unimap-0.1 | he4a0461_4 104 KB bioconda\n", " wget-1.21.4 | hda4d442_0 752 KB conda-forge\n", " wheel-0.46.3 | pyhd8ed1ab_0 31 KB conda-forge\n", " xcb-util-0.4.0 | hd590300_1 19 KB conda-forge\n", " xcb-util-image-0.4.0 | h8ee46fc_1 24 KB conda-forge\n", " xcb-util-keysyms-0.4.0 | h8ee46fc_1 14 KB conda-forge\n", " xcb-util-renderutil-0.3.9 | hd590300_1 17 KB conda-forge\n", " xcb-util-wm-0.4.1 | h8ee46fc_1 51 KB conda-forge\n", " xkeyboard-config-2.42 | h4ab18f5_0 380 KB conda-forge\n", " xorg-kbproto-1.0.7 | hb9d3cd8_1003 30 KB conda-forge\n", " xorg-libx11-1.8.9 | h8ee46fc_0 809 KB conda-forge\n", " xorg-libxext-1.3.4 | h0b41bf4_2 49 KB conda-forge\n", " xorg-libxrender-0.9.11 | hd590300_0 37 KB conda-forge\n", " xorg-libxt-1.3.0 | hd590300_1 370 KB conda-forge\n", " xorg-renderproto-0.11.1 | hb9d3cd8_1003 12 KB conda-forge\n", " xorg-xextproto-7.3.0 | hb9d3cd8_1004 30 KB conda-forge\n", " xorg-xf86vidmodeproto-2.3.1| hb9d3cd8_1005 26 KB conda-forge\n", " xorg-xproto-7.0.31 | hb9d3cd8_1008 72 KB conda-forge\n", " xz-5.8.2 | ha02ee65_0 24 KB conda-forge\n", " xz-gpl-tools-5.8.2 | ha02ee65_0 33 KB conda-forge\n", " xz-tools-5.8.2 | hb03c661_0 94 KB conda-forge\n", " zlib-1.2.13 | h4ab18f5_6 91 KB conda-forge\n", " zstd-1.5.6 | ha6fb4c9_0 542 KB conda-forge\n", " ------------------------------------------------------------\n", " Total: 713.9 MB\n", "\n", "The following NEW packages will be INSTALLED:\n", "\n", " _libgcc_mutex conda-forge/linux-64::_libgcc_mutex-0.1-conda_forge \n", " _openmp_mutex conda-forge/linux-64::_openmp_mutex-4.5-2_gnu \n", " _r-mutex conda-forge/noarch::_r-mutex-1.0.1-anacondar_1 \n", " alsa-lib conda-forge/linux-64::alsa-lib-1.2.15.3-hb03c661_0 \n", " attr conda-forge/linux-64::attr-2.5.2-h39aace5_0 \n", " binutils_impl_lin~ conda-forge/linux-64::binutils_impl_linux-64-2.45-bootstrap_h59bd682_5 \n", " blast bioconda/linux-64::blast-2.14.0-pl5321h6f7f691_2 \n", " bwidget conda-forge/linux-64::bwidget-1.10.1-ha770c72_1 \n", " bzip2 conda-forge/linux-64::bzip2-1.0.8-hda65f42_8 \n", " c-ares conda-forge/linux-64::c-ares-1.34.6-hb03c661_0 \n", " ca-certificates conda-forge/noarch::ca-certificates-2026.1.4-hbd8a1cb_0 \n", " cairo conda-forge/linux-64::cairo-1.18.0-h3faef2a_0 \n", " cd-hit bioconda/linux-64::cd-hit-4.8.1-h43eeafb_11 \n", " curl conda-forge/linux-64::curl-8.8.0-he654da7_1 \n", " dbus conda-forge/linux-64::dbus-1.13.6-h5008d03_3 \n", " entrez-direct bioconda/linux-64::entrez-direct-24.0-he881be0_0 \n", " expat conda-forge/linux-64::expat-2.7.3-hecca717_0 \n", " font-ttf-dejavu-s~ conda-forge/noarch::font-ttf-dejavu-sans-mono-2.37-hab24e00_0 \n", " font-ttf-inconsol~ conda-forge/noarch::font-ttf-inconsolata-3.000-h77eed37_0 \n", " font-ttf-source-c~ conda-forge/noarch::font-ttf-source-code-pro-2.038-h77eed37_0 \n", " font-ttf-ubuntu conda-forge/noarch::font-ttf-ubuntu-0.83-h77eed37_3 \n", " fontconfig conda-forge/linux-64::fontconfig-2.14.2-h14ed4e7_0 \n", " fonts-conda-ecosy~ conda-forge/noarch::fonts-conda-ecosystem-1-0 \n", " fonts-conda-forge conda-forge/noarch::fonts-conda-forge-1-hc364b38_1 \n", " freetype conda-forge/linux-64::freetype-2.12.1-h267a509_2 \n", " fribidi conda-forge/linux-64::fribidi-1.0.16-hb03c661_0 \n", " gcc_impl_linux-64 conda-forge/linux-64::gcc_impl_linux-64-15.2.0-hc5723f1_16 \n", " gdk-pixbuf conda-forge/linux-64::gdk-pixbuf-2.42.12-hb9ae30d_0 \n", " gfortran_impl_lin~ conda-forge/linux-64::gfortran_impl_linux-64-15.2.0-h281d09f_16 \n", " giflib conda-forge/linux-64::giflib-5.2.2-hd590300_0 \n", " glib conda-forge/linux-64::glib-2.80.2-hf974151_0 \n", " glib-tools conda-forge/linux-64::glib-tools-2.80.2-hb6ce0ca_0 \n", " gnuplot conda-forge/linux-64::gnuplot-5.4.10-hb1719d7_0 \n", " graphite2 conda-forge/linux-64::graphite2-1.3.14-hecca717_2 \n", " gst-plugins-base conda-forge/linux-64::gst-plugins-base-1.24.4-h9ad1361_0 \n", " gstreamer conda-forge/linux-64::gstreamer-1.24.4-haf2f30d_0 \n", " gxx_impl_linux-64 conda-forge/linux-64::gxx_impl_linux-64-15.2.0-hda75c37_16 \n", " harfbuzz conda-forge/linux-64::harfbuzz-9.0.0-hfac3d4d_0 \n", " icu conda-forge/linux-64::icu-73.2-h59595ed_0 \n", " k8 bioconda/linux-64::k8-0.2.5-hdcf5f25_4 \n", " kernel-headers_li~ conda-forge/noarch::kernel-headers_linux-64-6.12.0-he073ed8_5 \n", " keyutils conda-forge/linux-64::keyutils-1.6.3-hb9d3cd8_0 \n", " krb5 conda-forge/linux-64::krb5-1.21.3-h659f571_0 \n", " lame conda-forge/linux-64::lame-3.100-h166bdaf_1003 \n", " ld_impl_linux-64 conda-forge/linux-64::ld_impl_linux-64-2.45-bootstrap_ha15bf96_5 \n", " lerc conda-forge/linux-64::lerc-4.0.0-h0aef613_1 \n", " libblas conda-forge/linux-64::libblas-3.11.0-5_h4a7cf45_openblas \n", " libcap conda-forge/linux-64::libcap-2.77-h3ff7636_0 \n", " libclang-cpp15 conda-forge/linux-64::libclang-cpp15-15.0.7-default_h127d8a8_5 \n", " libclang13 conda-forge/linux-64::libclang13-18.1.7-default_h087397f_0 \n", " libcups conda-forge/linux-64::libcups-2.3.3-h4637d8d_4 \n", " libcurl conda-forge/linux-64::libcurl-8.8.0-hca28451_1 \n", " libdeflate conda-forge/linux-64::libdeflate-1.20-hd590300_0 \n", " libedit conda-forge/linux-64::libedit-3.1.20250104-pl5321h7949ede_0 \n", " libev conda-forge/linux-64::libev-4.33-hd590300_2 \n", " libevent conda-forge/linux-64::libevent-2.1.12-hf998b51_1 \n", " libexpat conda-forge/linux-64::libexpat-2.7.3-hecca717_0 \n", " libffi conda-forge/linux-64::libffi-3.5.2-h3435931_0 \n", " libflac conda-forge/linux-64::libflac-1.5.0-he200343_1 \n", " libgcc conda-forge/linux-64::libgcc-15.2.0-he0feb66_16 \n", " libgcc-devel_linu~ conda-forge/noarch::libgcc-devel_linux-64-15.2.0-hcc6f6b0_116 \n", " libgcc-ng conda-forge/linux-64::libgcc-ng-15.2.0-h69a702a_16 \n", " libgd conda-forge/linux-64::libgd-2.3.3-h119a65a_9 \n", " libgfortran conda-forge/linux-64::libgfortran-15.2.0-h69a702a_16 \n", " libgfortran-ng conda-forge/linux-64::libgfortran-ng-15.2.0-h69a702a_16 \n", " libgfortran5 conda-forge/linux-64::libgfortran5-15.2.0-h68bc16d_16 \n", " libglib conda-forge/linux-64::libglib-2.80.2-hf974151_0 \n", " libgomp conda-forge/linux-64::libgomp-15.2.0-he0feb66_16 \n", " libiconv conda-forge/linux-64::libiconv-1.18-h3b78370_2 \n", " libidn2 conda-forge/linux-64::libidn2-2.3.8-hfac485b_1 \n", " libjpeg-turbo conda-forge/linux-64::libjpeg-turbo-3.1.2-hb03c661_0 \n", " liblapack conda-forge/linux-64::liblapack-3.11.0-5_h47877c9_openblas \n", " libllvm15 conda-forge/linux-64::libllvm15-15.0.7-hb3ce162_4 \n", " libllvm18 conda-forge/linux-64::libllvm18-18.1.7-hb77312f_0 \n", " liblzma conda-forge/linux-64::liblzma-5.8.2-hb03c661_0 \n", " liblzma-devel conda-forge/linux-64::liblzma-devel-5.8.2-hb03c661_0 \n", " libnghttp2 conda-forge/linux-64::libnghttp2-1.58.0-h47da74e_1 \n", " libnsl conda-forge/linux-64::libnsl-2.0.1-hb9d3cd8_1 \n", " libogg conda-forge/linux-64::libogg-1.3.5-hd0c01bc_1 \n", " libopenblas conda-forge/linux-64::libopenblas-0.3.30-pthreads_h94d23a6_4 \n", " libopus conda-forge/linux-64::libopus-1.6.1-h280c20c_0 \n", " libpng conda-forge/linux-64::libpng-1.6.43-h2797004_0 \n", " libpq conda-forge/linux-64::libpq-16.11-hc183893_2 \n", " librsvg conda-forge/linux-64::librsvg-2.58.1-hadf69e7_0 \n", " libsanitizer conda-forge/linux-64::libsanitizer-15.2.0-h90f66d4_16 \n", " libsndfile conda-forge/linux-64::libsndfile-1.2.2-hc7d488a_2 \n", " libsqlite conda-forge/linux-64::libsqlite-3.46.0-hde9e2c9_0 \n", " libssh2 conda-forge/linux-64::libssh2-1.11.0-h0841786_0 \n", " libstdcxx conda-forge/linux-64::libstdcxx-15.2.0-h934c35e_16 \n", " libstdcxx-devel_l~ conda-forge/noarch::libstdcxx-devel_linux-64-15.2.0-hd446a21_116 \n", " libstdcxx-ng conda-forge/linux-64::libstdcxx-ng-15.2.0-hdf11a46_16 \n", " libsystemd0 conda-forge/linux-64::libsystemd0-258.3-h6569c3e_0 \n", " libtiff conda-forge/linux-64::libtiff-4.6.0-h1dd3fc0_3 \n", " libunistring conda-forge/linux-64::libunistring-0.9.10-h7f98852_0 \n", " libuuid conda-forge/linux-64::libuuid-2.41.3-h5347b49_0 \n", " libvorbis conda-forge/linux-64::libvorbis-1.3.7-h54a6638_2 \n", " libwebp conda-forge/linux-64::libwebp-1.4.0-h2c329e2_0 \n", " libwebp-base conda-forge/linux-64::libwebp-base-1.4.0-hd590300_0 \n", " libxcb conda-forge/linux-64::libxcb-1.15-h0b41bf4_0 \n", " libxcrypt conda-forge/linux-64::libxcrypt-4.4.36-hd590300_1 \n", " libxkbcommon conda-forge/linux-64::libxkbcommon-1.7.0-h662e7e4_0 \n", " libxml2 conda-forge/linux-64::libxml2-2.12.7-hc051c1a_1 \n", " libzlib conda-forge/linux-64::libzlib-1.2.13-h4ab18f5_6 \n", " make conda-forge/linux-64::make-4.4.1-hb9d3cd8_2 \n", " minimap2 bioconda/linux-64::minimap2-2.26-he4a0461_2 \n", " mpg123 conda-forge/linux-64::mpg123-1.32.9-hc50e24c_0 \n", " mummer4 bioconda/linux-64::mummer4-4.0.0rc1-pl5321hdbdd923_7 \n", " mysql-common conda-forge/linux-64::mysql-common-8.3.0-hf1915f5_4 \n", " mysql-libs conda-forge/linux-64::mysql-libs-8.3.0-hca2cd23_4 \n", " ncbi-vdb bioconda/linux-64::ncbi-vdb-3.3.0-h9948957_0 \n", " ncurses conda-forge/linux-64::ncurses-6.5-h2d0b736_3 \n", " nspr conda-forge/linux-64::nspr-4.38-h29cc59b_0 \n", " nss conda-forge/linux-64::nss-3.100-hca3bf56_0 \n", " openssl conda-forge/linux-64::openssl-3.6.1-h35e630c_1 \n", " packaging conda-forge/noarch::packaging-26.0-pyhcf101f3_0 \n", " pango conda-forge/linux-64::pango-1.54.0-h4c5309f_1 \n", " pcre conda-forge/linux-64::pcre-8.45-h9c3ff4c_0 \n", " pcre2 conda-forge/linux-64::pcre2-10.43-hcad00b1_0 \n", " perl conda-forge/linux-64::perl-5.32.1-7_hd590300_perl5 \n", " perl-archive-tar bioconda/noarch::perl-archive-tar-3.04-pl5321hdfd78af_0 \n", " perl-carp conda-forge/noarch::perl-carp-1.50-pl5321hd8ed1ab_0 \n", " perl-common-sense conda-forge/noarch::perl-common-sense-3.75-pl5321hd8ed1ab_0 \n", " perl-compress-raw~ conda-forge/linux-64::perl-compress-raw-bzip2-2.214-pl5321hda65f42_0 \n", " perl-compress-raw~ conda-forge/linux-64::perl-compress-raw-zlib-2.214-pl5321h4dac143_0 \n", " perl-encode conda-forge/linux-64::perl-encode-3.21-pl5321hb9d3cd8_1 \n", " perl-exporter conda-forge/noarch::perl-exporter-5.74-pl5321hd8ed1ab_0 \n", " perl-exporter-tiny conda-forge/noarch::perl-exporter-tiny-1.002002-pl5321hd8ed1ab_0 \n", " perl-extutils-mak~ conda-forge/noarch::perl-extutils-makemaker-7.70-pl5321hd8ed1ab_0 \n", " perl-io-compress bioconda/linux-64::perl-io-compress-2.216-pl5321h503566f_0 \n", " perl-io-zlib bioconda/noarch::perl-io-zlib-1.15-pl5321hdfd78af_1 \n", " perl-json bioconda/noarch::perl-json-4.10-pl5321hdfd78af_1 \n", " perl-json-xs bioconda/linux-64::perl-json-xs-4.04-pl5321h9948957_0 \n", " perl-list-moreuti~ bioconda/noarch::perl-list-moreutils-0.430-pl5321hdfd78af_0 \n", " perl-list-moreuti~ bioconda/linux-64::perl-list-moreutils-xs-0.430-pl5321h7b50bb2_5 \n", " perl-parent conda-forge/noarch::perl-parent-0.243-pl5321hd8ed1ab_0 \n", " perl-pathtools conda-forge/linux-64::perl-pathtools-3.75-pl5321hb9d3cd8_2 \n", " perl-scalar-list-~ conda-forge/linux-64::perl-scalar-list-utils-1.70-pl5321hb03c661_0 \n", " perl-storable conda-forge/linux-64::perl-storable-3.15-pl5321hb9d3cd8_2 \n", " perl-types-serial~ bioconda/noarch::perl-types-serialiser-1.01-pl5321hdfd78af_0 \n", " pip conda-forge/noarch::pip-26.0-pyh8b19718_0 \n", " pixman conda-forge/linux-64::pixman-0.46.4-h54a6638_1 \n", " pthread-stubs conda-forge/linux-64::pthread-stubs-0.4-hb9d3cd8_1002 \n", " pulseaudio-client conda-forge/linux-64::pulseaudio-client-17.0-hb77b528_0 \n", " python conda-forge/linux-64::python-3.11.4-hab00c5b_0_cpython \n", " qt-main conda-forge/linux-64::qt-main-5.15.8-hc9dc06e_21 \n", " r conda-forge/noarch::r-4.3-r43hd8ed1ab_1008 \n", " r-base conda-forge/linux-64::r-base-4.3.3-hf0d99cb_1 \n", " r-base64enc conda-forge/linux-64::r-base64enc-0.1_3-r43hb1dbf0f_1007 \n", " r-boot conda-forge/noarch::r-boot-1.3_32-r43hc72bb7e_0 \n", " r-class conda-forge/linux-64::r-class-7.3_23-r43h2b5f3a1_0 \n", " r-cli conda-forge/linux-64::r-cli-3.6.5-r43h93ab643_0 \n", " r-cluster conda-forge/linux-64::r-cluster-2.1.8.1-r43hb67ce94_0 \n", " r-codetools conda-forge/noarch::r-codetools-0.2_20-r43hc72bb7e_1 \n", " r-colorspace conda-forge/linux-64::r-colorspace-2.1_1-r43hdb488b9_0 \n", " r-crayon conda-forge/noarch::r-crayon-1.5.3-r43hc72bb7e_1 \n", " r-dplyr conda-forge/linux-64::r-dplyr-1.1.4-r43h0d4f4ea_1 \n", " r-ellipsis conda-forge/linux-64::r-ellipsis-0.3.2-r43hb1dbf0f_3 \n", " r-fansi conda-forge/linux-64::r-fansi-1.0.6-r43hb1dbf0f_1 \n", " r-farver conda-forge/linux-64::r-farver-2.1.2-r43ha18555a_1 \n", " r-foreign conda-forge/linux-64::r-foreign-0.8_90-r43h2b5f3a1_0 \n", " r-generics conda-forge/noarch::r-generics-0.1.4-r43hc72bb7e_0 \n", " r-ggplot2 conda-forge/noarch::r-ggplot2-3.4.4-r43hc72bb7e_0 \n", " r-glue conda-forge/linux-64::r-glue-1.8.0-r43h2b5f3a1_0 \n", " r-grimport2 conda-forge/noarch::r-grimport2-0.3_3-r43hc72bb7e_0 \n", " r-gtable conda-forge/noarch::r-gtable-0.3.6-r43hc72bb7e_0 \n", " r-isoband conda-forge/linux-64::r-isoband-0.2.7-r43ha18555a_3 \n", " r-jpeg conda-forge/linux-64::r-jpeg-0.1_11-r43hc5f1ce6_0 \n", " r-kernsmooth conda-forge/linux-64::r-kernsmooth-2.23_26-r43h8461fee_0 \n", " r-labeling conda-forge/noarch::r-labeling-0.4.3-r43hc72bb7e_1 \n", " r-lattice conda-forge/linux-64::r-lattice-0.22_7-r43h2b5f3a1_0 \n", " r-lifecycle conda-forge/noarch::r-lifecycle-1.0.4-r43hc72bb7e_1 \n", " r-magrittr conda-forge/linux-64::r-magrittr-2.0.3-r43hb1dbf0f_3 \n", " r-mass conda-forge/linux-64::r-mass-7.3_60.0.1-r43hb1dbf0f_1 \n", " r-matrix conda-forge/linux-64::r-matrix-1.6_5-r43he966344_1 \n", " r-mgcv conda-forge/linux-64::r-mgcv-1.9_3-r43h2ae2be5_0 \n", " r-munsell conda-forge/noarch::r-munsell-0.5.1-r43hc72bb7e_1 \n", " r-nlme conda-forge/linux-64::r-nlme-3.1_168-r43hb67ce94_0 \n", " r-nnet conda-forge/linux-64::r-nnet-7.3_20-r43h2b5f3a1_0 \n", " r-pillar conda-forge/noarch::r-pillar-1.11.0-r43hc72bb7e_0 \n", " r-pkgconfig conda-forge/noarch::r-pkgconfig-2.0.3-r43hc72bb7e_4 \n", " r-png conda-forge/linux-64::r-png-0.1_8-r43h21f035c_2 \n", " r-purrr conda-forge/linux-64::r-purrr-1.1.0-r43h54b55ab_0 \n", " r-r6 conda-forge/noarch::r-r6-2.6.1-r43hc72bb7e_0 \n", " r-rcolorbrewer conda-forge/noarch::r-rcolorbrewer-1.1_3-r43h785f33e_3 \n", " r-recommended conda-forge/noarch::r-recommended-4.3-r43hd8ed1ab_1007 \n", " r-rideogram conda-forge/noarch::r-rideogram-0.2.2-r43hc72bb7e_4 \n", " r-rlang conda-forge/linux-64::r-rlang-1.1.6-r43h93ab643_0 \n", " r-rpart conda-forge/linux-64::r-rpart-4.1.24-r43h2b5f3a1_0 \n", " r-rsvg conda-forge/linux-64::r-rsvg-2.6.0-r43hc7fd59d_1 \n", " r-scales conda-forge/noarch::r-scales-1.4.0-r43hc72bb7e_0 \n", " r-spatial conda-forge/linux-64::r-spatial-7.3_18-r43h2b5f3a1_0 \n", " r-stringi conda-forge/linux-64::r-stringi-1.8.4-r43ha8ce623_2 \n", " r-stringr conda-forge/noarch::r-stringr-1.5.2-r43h785f33e_0 \n", " r-survival conda-forge/linux-64::r-survival-3.8_3-r43h2b5f3a1_0 \n", " r-tibble conda-forge/linux-64::r-tibble-3.3.0-r43h2b5f3a1_0 \n", " r-tidyr conda-forge/linux-64::r-tidyr-1.3.1-r43h0d4f4ea_1 \n", " r-tidyselect conda-forge/noarch::r-tidyselect-1.2.1-r43hc72bb7e_1 \n", " r-utf8 conda-forge/linux-64::r-utf8-1.2.6-r43h2b5f3a1_0 \n", " r-vctrs conda-forge/linux-64::r-vctrs-0.6.5-r43h0d4f4ea_1 \n", " r-viridislite conda-forge/noarch::r-viridislite-0.4.2-r43hc72bb7e_2 \n", " r-withr conda-forge/noarch::r-withr-3.0.2-r43hc72bb7e_0 \n", " r-xml conda-forge/linux-64::r-xml-3.99_0.17-r43he716329_1 \n", " readline conda-forge/linux-64::readline-8.3-h853b02a_0 \n", " sed conda-forge/linux-64::sed-4.9-h6688a6e_0 \n", " setuptools conda-forge/noarch::setuptools-80.10.2-pyh332efcf_0 \n", " sysroot_linux-64 conda-forge/noarch::sysroot_linux-64-2.39-hc4b9eeb_5 \n", " tidk bioconda/linux-64::tidk-0.2.31-hdbdd923_2 \n", " tk conda-forge/linux-64::tk-8.6.13-noxft_h4845f30_101 \n", " tktable conda-forge/linux-64::tktable-2.10-h8d826fa_7 \n", " trf bioconda/linux-64::trf-4.09.1-h7b50bb2_7 \n", " tzdata conda-forge/noarch::tzdata-2025c-hc9c84f9_1 \n", " unimap bioconda/linux-64::unimap-0.1-he4a0461_4 \n", " wget conda-forge/linux-64::wget-1.21.4-hda4d442_0 \n", " wheel conda-forge/noarch::wheel-0.46.3-pyhd8ed1ab_0 \n", " xcb-util conda-forge/linux-64::xcb-util-0.4.0-hd590300_1 \n", " xcb-util-image conda-forge/linux-64::xcb-util-image-0.4.0-h8ee46fc_1 \n", " xcb-util-keysyms conda-forge/linux-64::xcb-util-keysyms-0.4.0-h8ee46fc_1 \n", " xcb-util-renderut~ conda-forge/linux-64::xcb-util-renderutil-0.3.9-hd590300_1 \n", " xcb-util-wm conda-forge/linux-64::xcb-util-wm-0.4.1-h8ee46fc_1 \n", " xkeyboard-config conda-forge/linux-64::xkeyboard-config-2.42-h4ab18f5_0 \n", " xorg-kbproto conda-forge/linux-64::xorg-kbproto-1.0.7-hb9d3cd8_1003 \n", " xorg-libice conda-forge/linux-64::xorg-libice-1.1.2-hb9d3cd8_0 \n", " xorg-libsm conda-forge/linux-64::xorg-libsm-1.2.6-he73a12e_0 \n", " xorg-libx11 conda-forge/linux-64::xorg-libx11-1.8.9-h8ee46fc_0 \n", " xorg-libxau conda-forge/linux-64::xorg-libxau-1.0.12-hb03c661_1 \n", " xorg-libxdmcp conda-forge/linux-64::xorg-libxdmcp-1.1.5-hb03c661_1 \n", " xorg-libxext conda-forge/linux-64::xorg-libxext-1.3.4-h0b41bf4_2 \n", " xorg-libxrender conda-forge/linux-64::xorg-libxrender-0.9.11-hd590300_0 \n", " xorg-libxt conda-forge/linux-64::xorg-libxt-1.3.0-hd590300_1 \n", " xorg-renderproto conda-forge/linux-64::xorg-renderproto-0.11.1-hb9d3cd8_1003 \n", " xorg-xextproto conda-forge/linux-64::xorg-xextproto-7.3.0-hb9d3cd8_1004 \n", " xorg-xf86vidmodep~ conda-forge/linux-64::xorg-xf86vidmodeproto-2.3.1-hb9d3cd8_1005 \n", " xorg-xproto conda-forge/linux-64::xorg-xproto-7.0.31-hb9d3cd8_1008 \n", " xz conda-forge/linux-64::xz-5.8.2-ha02ee65_0 \n", " xz-gpl-tools conda-forge/linux-64::xz-gpl-tools-5.8.2-ha02ee65_0 \n", " xz-tools conda-forge/linux-64::xz-tools-5.8.2-hb03c661_0 \n", " zlib conda-forge/linux-64::zlib-1.2.13-h4ab18f5_6 \n", " zstd conda-forge/linux-64::zstd-1.5.6-ha6fb4c9_0 \n", "\n", "\n", "\n", "Downloading and Extracting Packages:\n", "blast-2.14.0 | 145.7 MB | | 0% \n", "gcc_impl_linux-64-15 | 76.6 MB | | 0% \u001b[A\n", "\n", "qt-main-5.15.8 | 58.5 MB | | 0% \u001b[A\u001b[A\n", "\n", "\n", "sysroot_linux-64-2.3 | 39.6 MB | | 0% \u001b[A\u001b[A\u001b[A\n", "\n", "\n", "\n", "libllvm18-18.1.7 | 36.6 MB | | 0% \u001b[A\u001b[A\u001b[A\u001b[A\n", "\n", "\n", "\n", "\n", "libllvm15-15.0.7 | 31.8 MB | | 0% \u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\n", "\n", "\n", "\n", "\n", "\n", "python-3.11.4 | 29.3 MB | | 0% \u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\n", "\n", "\n", "\n", "\n", "\n", "\n", "r-base-4.3.3 | 24.5 MB | | 0% \u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "libstdcxx-devel_linu | 19.8 MB | | 0% \u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "gfortran_impl_linux- | 19.1 MB | | 0% \u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "libclang-cpp15-15.0. | 16.4 MB | | 0% \u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\n", 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"r-ggplot2-3.4.4 | 3.9 MB | | 0% \u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", " ... (more hidden) ...\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\n", "gcc_impl_linux-64-15 | 76.6 MB | | 0% \u001b[A\n", "\n", "\n", "\n", "libllvm18-18.1.7 | 36.6 MB | | 0% \u001b[A\u001b[A\u001b[A\u001b[A\n", "\n", "blast-2.14.0 | 145.7 MB | | 0% \u001b[A\u001b[A\n", "\n", "\n", "sysroot_linux-64-2.3 | 39.6 MB | | 0% \u001b[A\u001b[A\u001b[A\n", "gcc_impl_linux-64-15 | 76.6 MB | ###4 | 9% \u001b[A\n", "\n", "\n", "\n", "libllvm18-18.1.7 | 36.6 MB | ##6 | 7% \u001b[A\u001b[A\u001b[A\u001b[A\n", "\n", "\n", "sysroot_linux-64-2.3 | 39.6 MB | ##1 | 6% \u001b[A\u001b[A\u001b[A\n", "\n", "blast-2.14.0 | 145.7 MB | 8 | 2% \u001b[A\u001b[A\n", "\n", "\n", "\n", "libllvm18-18.1.7 | 36.6 MB | #####3 | 14% \u001b[A\u001b[A\u001b[A\u001b[A\n", "gcc_impl_linux-64-15 | 76.6 MB | #####4 | 15% \u001b[A\n", "\n", "\n", "sysroot_linux-64-2.3 | 39.6 MB | #####2 | 14% \u001b[A\u001b[A\u001b[A\n", "\n", "blast-2.14.0 | 145.7 MB | #6 | 4% \u001b[A\u001b[A\n", "\n", "\n", "\n", "libllvm18-18.1.7 | 36.6 MB | ########4 | 23% \u001b[A\u001b[A\u001b[A\u001b[A\n", "gcc_impl_linux-64-15 | 76.6 MB | #######2 | 20% \u001b[A\n", "\n", "qt-main-5.15.8 | 58.5 MB | ####9 | 13% \u001b[A\u001b[A\n", "\n", "\n", "blast-2.14.0 | 145.7 MB | ##4 | 7% \u001b[A\u001b[A\u001b[A\n", "\n", "\n", "\n", "libllvm18-18.1.7 | 36.6 MB | ###########7 | 32% \u001b[A\u001b[A\u001b[A\u001b[A\n", "\n", "qt-main-5.15.8 | 58.5 MB | ####### | 19% \u001b[A\u001b[A\n", "\n", "\n", "sysroot_linux-64-2.3 | 39.6 MB | ##########7 | 29% \u001b[A\u001b[A\u001b[A\n", "blast-2.14.0 | 145.7 MB | ###1 | 9% \u001b[A\n", "\n", "\n", "\n", "libllvm18-18.1.7 | 36.6 MB | ###############6 | 42% \u001b[A\u001b[A\u001b[A\u001b[A\n", "\n", "qt-main-5.15.8 | 58.5 MB | #########4 | 25% \u001b[A\u001b[A\n", "\n", "\n", "blast-2.14.0 | 145.7 MB | ####2 | 12% \u001b[A\u001b[A\u001b[A\n", "gcc_impl_linux-64-15 | 76.6 MB | ##########8 | 29% \u001b[A\n", "\n", "\n", "\n", "libllvm18-18.1.7 | 36.6 MB | ###################5 | 53% \u001b[A\u001b[A\u001b[A\u001b[A\n", "\n", "qt-main-5.15.8 | 58.5 MB | ###########4 | 31% \u001b[A\u001b[A\n", "\n", "\n", "sysroot_linux-64-2.3 | 39.6 MB | #################5 | 47% \u001b[A\u001b[A\u001b[A\n", "blast-2.14.0 | 145.7 MB | #####1 | 14% \u001b[A\n", "\n", "\n", "\n", "libllvm18-18.1.7 | 36.6 MB | ####################### | 62% \u001b[A\u001b[A\u001b[A\u001b[A\n", "\n", "qt-main-5.15.8 | 58.5 MB | #############4 | 36% \u001b[A\u001b[A\n", "\n", "\n", "blast-2.14.0 | 145.7 MB | #####9 | 16% \u001b[A\u001b[A\u001b[A\n", "gcc_impl_linux-64-15 | 76.6 MB | ##############1 | 38% \u001b[A\n", "\n", "\n", "\n", "libllvm18-18.1.7 | 36.6 MB | ##########################4 | 71% \u001b[A\u001b[A\u001b[A\u001b[A\n", "\n", "qt-main-5.15.8 | 58.5 MB | ###############3 | 42% \u001b[A\u001b[A\n", "\n", "\n", "blast-2.14.0 | 145.7 MB | ######7 | 18% \u001b[A\u001b[A\u001b[A\n", "gcc_impl_linux-64-15 | 76.6 MB | ###############6 | 42% \u001b[A\n", "\n", "\n", "\n", "libllvm18-18.1.7 | 36.6 MB | #############################8 | 81% \u001b[A\u001b[A\u001b[A\u001b[A\n", "\n", "qt-main-5.15.8 | 58.5 MB | #################2 | 47% \u001b[A\u001b[A\n", "\n", "\n", "blast-2.14.0 | 145.7 MB | #######5 | 20% \u001b[A\u001b[A\u001b[A\n", "\n", "\n", "\n", "libllvm18-18.1.7 | 36.6 MB | #################################4 | 90% \u001b[A\u001b[A\u001b[A\u001b[A\n", "gcc_impl_linux-64-15 | 76.6 MB | #################4 | 47% \u001b[A\n", "\n", "qt-main-5.15.8 | 58.5 MB | #################### | 54% \u001b[A\u001b[A\n", "\n", "\n", "blast-2.14.0 | 145.7 MB | ########4 | 23% \u001b[A\u001b[A\u001b[A\n", "\n", "\n", "\n", "libllvm18-18.1.7 | 36.6 MB | ####################################5 | 99% \u001b[A\u001b[A\u001b[A\u001b[A\n", "gcc_impl_linux-64-15 | 76.6 MB | ##################8 | 51% \u001b[A\n", "\n", "qt-main-5.15.8 | 58.5 MB | ######################1 | 60% \u001b[A\u001b[A\n", "\n", "\n", "blast-2.14.0 | 145.7 MB | #########2 | 25% \u001b[A\u001b[A\u001b[A\n", "gcc_impl_linux-64-15 | 76.6 MB | ####################6 | 56% \u001b[A\n", "\n", "qt-main-5.15.8 | 58.5 MB | ########################2 | 66% \u001b[A\u001b[A\n", "\n", "\n", "blast-2.14.0 | 145.7 MB | ##########2 | 28% \u001b[A\u001b[A\u001b[A\n", "gcc_impl_linux-64-15 | 76.6 MB | ######################2 | 60% \u001b[A\n", "\n", "blast-2.14.0 | 145.7 MB | ###########3 | 31% \u001b[A\u001b[A\n", "gcc_impl_linux-64-15 | 76.6 MB | ########################1 | 65% \u001b[A\n", "\n", "blast-2.14.0 | 145.7 MB | ############3 | 33% \u001b[A\u001b[A\n", "blast-2.14.0 | 145.7 MB | #############4 | 36% \u001b[A\n", "\n", "qt-main-5.15.8 | 58.5 MB | ###############################3 | 85% \u001b[A\u001b[A\n", "gcc_impl_linux-64-15 | 76.6 MB | ############################3 | 77% \u001b[A\n", "\n", "blast-2.14.0 | 145.7 MB | ##############3 | 39% \u001b[A\u001b[A\n", "\n", "\n", "\n", "libllvm18-18.1.7 | 36.6 MB | ##################################### | 100% \u001b[A\u001b[A\u001b[A\u001b[A\n", "gcc_impl_linux-64-15 | 76.6 MB | ##############################2 | 82% \u001b[A\n", "\n", "\n", "\n", "\n", "libllvm15-15.0.7 | 31.8 MB | | 0% \u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\n", "\n", "blast-2.14.0 | 145.7 MB | ###############2 | 41% \u001b[A\u001b[A\n", "\n", "\n", "\n", "\n", "libllvm15-15.0.7 | 31.8 MB | ##1 | 6% \u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\n", "gcc_impl_linux-64-15 | 76.6 MB | ################################ | 87% \u001b[A\n", "\n", "\n", "\n", "\n", "blast-2.14.0 | 145.7 MB | ################ | 43% \u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\n", "\n", "\n", "\n", "\n", "libllvm15-15.0.7 | 31.8 MB | #####6 | 15% \u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\n", "blast-2.14.0 | 145.7 MB | ################7 | 45% \u001b[A\n", "\n", "\n", "\n", "\n", "libllvm15-15.0.7 | 31.8 MB | ########4 | 23% \u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\n", "gcc_impl_linux-64-15 | 76.6 MB | ##################################8 | 94% \u001b[A\n", "\n", "\n", "\n", "\n", "blast-2.14.0 | 145.7 MB | #################4 | 47% \u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\n", "\n", "\n", "\n", "\n", "blast-2.14.0 | 145.7 MB | ##################1 | 49% \u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\n", "gcc_impl_linux-64-15 | 76.6 MB | ####################################1 | 98% \u001b[A\n", "\n", "\n", "sysroot_linux-64-2.3 | 39.6 MB | ##################################### | 100% \u001b[A\u001b[A\u001b[A\n", "\n", "\n", "\n", "\n", "libllvm15-15.0.7 | 31.8 MB | ################2 | 44% \u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\n", "\n", "\n", "\n", "\n", "\n", "blast-2.14.0 | 145.7 MB | ##################9 | 51% \u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\n", "\n", "\n", "\n", "\n", "libllvm15-15.0.7 | 31.8 MB | ##################9 | 51% \u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\n", "\n", "\n", "\n", "\n", "\n", "blast-2.14.0 | 145.7 MB | ###################5 | 53% \u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\n", "\n", "\n", "\n", "\n", "\n", "python-3.11.4 | 29.3 MB | #####1 | 14% \u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\n", "\n", "\n", "\n", "\n", "blast-2.14.0 | 145.7 MB | ####################2 | 55% \u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\n", "\n", "\n", "\n", "\n", "\n", "python-3.11.4 | 29.3 MB | #######1 | 19% \u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\n", "\n", "\n", "\n", "\n", "blast-2.14.0 | 145.7 MB | ####################8 | 56% \u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\n", "\n", "\n", "\n", "\n", "\n", "python-3.11.4 | 29.3 MB | ########## | 27% \u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\n", "\n", "\n", "\n", "\n", "blast-2.14.0 | 145.7 MB | #####################4 | 58% \u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\n", "\n", "\n", "\n", "\n", "\n", "python-3.11.4 | 29.3 MB | #############2 | 36% \u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\n", "\n", "\n", "\n", "\n", "blast-2.14.0 | 145.7 MB | ######################1 | 60% \u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\n", "\n", "\n", "\n", "\n", "\n", "python-3.11.4 | 29.3 MB | ################1 | 44% \u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\n", "\n", "\n", "\n", "\n", "blast-2.14.0 | 145.7 MB | ######################8 | 62% \u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\n", "\n", "\n", "\n", "\n", "\n", "python-3.11.4 | 29.3 MB | ###################2 | 52% \u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\n", "\n", "\n", "\n", "\n", "blast-2.14.0 | 145.7 MB | #######################3 | 63% \u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\n", "\n", "\n", "\n", "\n", "\n", "blast-2.14.0 | 145.7 MB | ######################## | 65% \u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\n", "\n", "\n", "\n", "\n", "\n", "blast-2.14.0 | 145.7 MB | ########################8 | 67% \u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\n", "\n", "\n", "\n", "\n", "\n", "blast-2.14.0 | 145.7 MB | #########################6 | 69% \u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\n", "\n", "\n", "\n", "\n", "\n", "blast-2.14.0 | 145.7 MB | ############################9 | 78% \u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\n", "\n", "qt-main-5.15.8 | 58.5 MB | ##################################### | 100% \u001b[A\u001b[A\n", "\n", "\n", "\n", "\n", "\n", "\n", "blast-2.14.0 | 145.7 MB | #############################7 | 80% \u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\n", "\n", "\n", "\n", "\n", "\n", "\n", "blast-2.14.0 | 145.7 MB | ##############################5 | 82% \u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\n", "\n", "\n", "\n", "\n", "\n", "\n", "r-base-4.3.3 | 24.5 MB | ######## | 22% \u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\n", "\n", "\n", "\n", "\n", "blast-2.14.0 | 145.7 MB | ###############################2 | 84% \u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "libstdcxx-devel_linu | 19.8 MB | | 0% \u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\n", "\n", "\n", "\n", "\n", "\n", "\n", "r-base-4.3.3 | 24.5 MB | ###########6 | 32% \u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "libstdcxx-devel_linu | 19.8 MB | ###7 | 10% \u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\n", "\n", "\n", "\n", "\n", "\n", "\n", "blast-2.14.0 | 145.7 MB | ###############################9 | 86% \u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\n", "\n", "\n", "\n", "\n", "\n", "\n", "r-base-4.3.3 | 24.5 MB | ##################3 | 50% \u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "blast-2.14.0 | 145.7 MB | ################################6 | 88% \u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\n", "\n", "\n", "\n", "\n", "\n", "\n", "r-base-4.3.3 | 24.5 MB | #####################6 | 59% \u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "blast-2.14.0 | 145.7 MB | #################################2 | 90% \u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\n", "\n", "\n", "\n", "\n", "\n", "\n", "r-base-4.3.3 | 24.5 MB | ######################### | 68% \u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "libstdcxx-devel_linu | 19.8 MB | ############## | 38% \u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\n", "\n", "\n", "\n", "\n", "\n", "blast-2.14.0 | 145.7 MB | #################################8 | 92% \u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "gfortran_impl_linux- | 19.1 MB | | 0% \u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "libstdcxx-devel_linu | 19.8 MB | #################5 | 48% \u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\n", "\n", "\n", "\n", "\n", "\n", "\n", "r-base-4.3.3 | 24.5 MB | ############################3 | 77% \u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "gfortran_impl_linux- | 19.1 MB | ####2 | 12% \u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "blast-2.14.0 | 145.7 MB | ##################################4 | 93% \u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\n", "\n", "\n", "\n", "\n", "\n", "\n", "r-base-4.3.3 | 24.5 MB | ###############################5 | 85% \u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "gfortran_impl_linux- | 19.1 MB | #######8 | 21% \u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "blast-2.14.0 | 145.7 MB | ################################### | 95% \u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\n", "\n", "\n", "\n", "\n", "\n", "\n", "r-base-4.3.3 | 24.5 MB | ##################################7 | 94% \u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "blast-2.14.0 | 145.7 MB | ###################################6 | 96% \u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "libstdcxx-devel_linu | 19.8 MB | #############################3 | 79% \u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "blast-2.14.0 | 145.7 MB | ####################################1 | 98% \u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "libstdcxx-devel_linu | 19.8 MB | ################################5 | 88% \u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "gfortran_impl_linux- | 19.1 MB | #################5 | 48% \u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "blast-2.14.0 | 145.7 MB | ####################################5 | 99% \u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "blast-2.14.0 | 145.7 MB | ####################################9 | 100% \u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "gfortran_impl_linux- | 19.1 MB | ########################3 | 66% \u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\n", "gcc_impl_linux-64-15 | 76.6 MB | ##################################### | 100% \u001b[A\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "gfortran_impl_linux- | 19.1 MB | ##############################8 | 83% \u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "libclang-cpp15-15.0. | 16.4 MB | | 0% \u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "gfortran_impl_linux- | 19.1 MB | ###################################6 | 96% \u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "libclang-cpp15-15.0. | 16.4 MB | #####1 | 14% \u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "libclang-cpp15-15.0. | 16.4 MB | #############4 | 36% \u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "libclang-cpp15-15.0. | 16.4 MB | ####################5 | 56% \u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "libclang-cpp15-15.0. | 16.4 MB | ##########################6 | 72% \u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "libstdcxx-devel_linu | 19.8 MB | ##################################### | 100% \u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "libclang-cpp15-15.0. | 16.4 MB | ################################6 | 88% \u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "entrez-direct-24.0 | 16.3 MB | | 0% \u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\n", "\n", "\n", "\n", "\n", "\n", "\n", "r-base-4.3.3 | 24.5 MB | ##################################### | 100% \u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "gxx_impl_linux-64-15 | 15.6 MB | | 0% \u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "entrez-direct-24.0 | 16.3 MB | #####4 | 15% \u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "gxx_impl_linux-64-15 | 15.6 MB | #####5 | 15% \u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "entrez-direct-24.0 | 16.3 MB | ##########9 | 30% \u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "gxx_impl_linux-64-15 | 15.6 MB | ########### | 30% \u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "entrez-direct-24.0 | 16.3 MB | ###############1 | 41% \u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "gxx_impl_linux-64-15 | 15.6 MB | #################2 | 47% \u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "gfortran_impl_linux- | 19.1 MB | ##################################### | 100% \u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "entrez-direct-24.0 | 16.3 MB | ####################5 | 56% \u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "perl-5.32.1 | 12.7 MB | | 0% \u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "gxx_impl_linux-64-15 | 15.6 MB | #######################2 | 63% \u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "entrez-direct-24.0 | 16.3 MB | #########################9 | 70% \u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "perl-5.32.1 | 12.7 MB | #####8 | 16% \u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "gxx_impl_linux-64-15 | 15.6 MB | ############################4 | 77% \u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "entrez-direct-24.0 | 16.3 MB | ###############################4 | 85% \u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "perl-5.32.1 | 12.7 MB | ##############1 | 38% \u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "gxx_impl_linux-64-15 | 15.6 MB | #################################7 | 91% \u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "entrez-direct-24.0 | 16.3 MB | ####################################5 | 99% \u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "perl-5.32.1 | 12.7 MB | ###################9 | 54% \u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "libclang-cpp15-15.0. | 16.4 MB | ##################################### | 100% \u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "perl-5.32.1 | 12.7 MB | ##########################9 | 73% \u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "icu-73.2 | 11.5 MB | | 0% \u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "icu-73.2 | 11.5 MB | #####2 | 14% \u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "perl-5.32.1 | 12.7 MB | #################################1 | 90% \u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "icu-73.2 | 11.5 MB | ###############9 | 43% \u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "icu-73.2 | 11.5 MB | #########################6 | 69% \u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "icu-73.2 | 11.5 MB | #################################4 | 91% \u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "gxx_impl_linux-64-15 | 15.6 MB | ##################################### | 100% \u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "libclang13-18.1.7 | 10.5 MB | | 0% \u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "entrez-direct-24.0 | 16.3 MB | ##################################### | 100% \u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "libclang13-18.1.7 | 10.5 MB | ##########9 | 30% \u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "ncbi-vdb-3.3.0 | 8.2 MB | | 0% \u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "perl-5.32.1 | 12.7 MB | ##################################### | 100% \u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "libclang13-18.1.7 | 10.5 MB | ##################5 | 50% \u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "r-survival-3.8_3 | 7.9 MB | | 0% \u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "ncbi-vdb-3.3.0 | 8.2 MB | ###########9 | 32% \u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "r-survival-3.8_3 | 7.9 MB | ########5 | 23% \u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", 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"\n", "\n", "\n", "\n", "\n", "\n", "\n", "libclang13-18.1.7 | 10.5 MB | ##################################### | 100% \u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "librsvg-2.58.1 | 6.0 MB | | 0% \u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "libstdcxx-15.2.0 | 5.6 MB | 1 | 0% \u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "librsvg-2.58.1 | 6.0 MB | #########8 | 27% \u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "libcups-2.3.3 | 4.3 MB | 1 | 0% \u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "libstdcxx-15.2.0 | 5.6 MB | ########4 | 23% \u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "librsvg-2.58.1 | 6.0 MB | ###################4 | 52% 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##################################### | 100% \u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "librsvg-2.58.1 | 6.0 MB | ####################################3 | 98% \u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "libcups-2.3.3 | 4.3 MB | ###################################5 | 96% \u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", 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##################################### | 100% \u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "ncbi-vdb-3.3.0 | 8.2 MB | ##################################### | 100% \u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "libcups-2.3.3 | 4.3 MB | ##################################### | 100% \u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "libclang13-18.1.7 | 10.5 MB | ##################################### | 100% 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##################################### | 100% \u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "libstdcxx-15.2.0 | 5.6 MB | ##################################### | 100% \u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "blast-2.14.0 | 145.7 MB | ##################################### | 100% [A\u001b[A\u001b[A\u001b[A\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", " \n", " \u001b[A\n", "\n", " \u001b[A\u001b[A\n", "\n", "\n", " 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\n", "- \n", "done\n", "#\n", "# To activate this environment, use\n", "#\n", "# $ conda activate quarTeTdependencies\n", "#\n", "# To deactivate an active environment, use\n", "#\n", "# $ conda deactivate\n", "\n" ] } ], "source": [ "conda create -n quarTeTdependencies --channel conda-forge --channel bioconda python=3.11.4 minimap2=2.26 mummer4=4.0.0rc1 trf=4.09.1 cd-hit=4.8.1 blast=2.14.0 tidk=0.2.31 r=4.3 r-rideogram=0.2.2 r-ggplot2=3.4.4 gnuplot=5.4 unimap=0.1 -y" ] }, { "cell_type": "code", "execution_count": 2, "id": "9ceec57f-44d9-413a-b449-d0258125dab4", "metadata": {}, "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ "Cloning into 'quarTeT'...\n", "remote: Enumerating objects: 289, done.\u001b[K\n", "remote: Counting objects: 100% (90/90), done.\u001b[K\n", "remote: Compressing objects: 100% (61/61), done.\u001b[K\n", "remote: Total 289 (delta 56), reused 57 (delta 29), pack-reused 199 (from 1)\u001b[K\n", "Receiving objects: 100% (289/289), 92.13 KiB | 4.00 MiB/s, done.\n", "Resolving deltas: 100% (193/193), done.\n" ] } ], "source": [ "git clone https://github.com/aaranyue/quarTeT" ] }, { "cell_type": "code", "execution_count": 4, "id": "8b8aebe3-723a-44b0-9953-9cf6530d3d40", "metadata": {}, "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ "usage: quartet_gapfiller.py [-h] -d DRAFT_GENOME -g GAPCLOSER_CONTIG\n", " [GAPCLOSER_CONTIG ...] [-f FLANKING_LEN]\n", " [-l MIN_ALIGNMENT_LENGTH]\n", " [-i MIN_ALIGNMENT_IDENTITY] [-m MAX_FILLING_LEN]\n", " [-a {minimap2,unimap}] [-p PREFIX] [-t THREADS]\n", " [--enablejoin] [--joinonly] [--overwrite]\n", " [--minimapoption MINIMAPOPTION] [--noplot]\n", "\n", "options:\n", " -h, --help show this help message and exit\n", " -d DRAFT_GENOME (*Required) Draft genome file to be filled, FASTA\n", " format.\n", " -g GAPCLOSER_CONTIG [GAPCLOSER_CONTIG ...]\n", " (*Required) All contigs files (accept multiple file)\n", " used to fill gaps, FASTA format.\n", " -f FLANKING_LEN The flanking seq length of gap used to anchor (bp),\n", " default: 5000\n", " -l MIN_ALIGNMENT_LENGTH\n", " The min alignment length to be select (bp), default:\n", " 1000\n", " -i MIN_ALIGNMENT_IDENTITY\n", " The min alignment identity to be select (%), default:\n", " 40\n", " -m MAX_FILLING_LEN The max sequence length acceptable to fill any gaps,\n", " default: 1000000\n", " -a {minimap2,unimap} Specify alignment program (support minimap2 and\n", " unimap), default: minimap2\n", " -p PREFIX The prefix used on generated files, default: quarTeT\n", " -t THREADS Use number of threads, default: 1\n", " --enablejoin Enable join mode to close the gaps. (Unstable)\n", " --joinonly Use only join mode without fill, should be used with\n", " --enablejoin.\n", " --overwrite Overwrite existing alignment file instead of reuse.\n", " --minimapoption MINIMAPOPTION\n", " Pass additional parameters to minimap2 program,\n", " default: -x asm5\n", " --noplot Skip all ploting.\n" ] } ], "source": [ "python3 quarTeT/quartet.py gf -h" ] }, { "cell_type": "code", "execution_count": null, "id": "27b2bb22-7a24-4f3f-95fe-d802c80195e3", "metadata": {}, "outputs": [], "source": [] } ], "metadata": { "kernelspec": { "display_name": "Bash", "language": "bash", "name": "bash" }, "language_info": { "codemirror_mode": "shell", "file_extension": ".sh", "mimetype": "text/x-sh", "name": "bash" } }, "nbformat": 4, "nbformat_minor": 5 }